PULL_REQUEST_TEMPLATE.md

@@ -1,15 +0,0 @@
-# Pull Request Template
-
-## Description
-Provide a concise summary of the changes, referenced work, or new research.
-
-## Checklist
-- [ ] I followed the **COLLABORATION.md** workflow guidelines.
-- [ ] All markdown files include a valid **front‑matter** block.
-- [ ] The **ci‑pre-push.sh** script passed locally.
-- [ ] I added an entry to `knowledge-base/index.md` if new knowledge was created.
-- [ ] I updated or reviewed any relevant `AGENTS.md` files.
-- [ ] No breaking changes were introduced.
-
----
-*All automated processes will run on this PR before merging.*

knowledge-base/index.md

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-# Knowledge Base Index
-
-Curated index of all distilled knowledge entries. Each entry links to its source research or daily log.
-
-## Core Identity & Collaboration
-- COLLABORATION.md: Complete agent collaboration playbook with forking, branching, PR process, CI checks, and communication channels
-- knowledge-base/morpheus-identity.md: Morpheus agent identity, stack overview, active workstreams, and evolution suggestions
-
-## Tech Studies
-- 2026-06-11-forgejo-url-change-and-repo-access.md: Forgejo URL migration analysis and repo access details
-
-## Daily Logs
-*No entries yet – use `./scripts/new-study.sh "topic" "YYYY-MM-DD"` to add.*
-
-## Backups
-- backups/hermes-memory-sanitized-2026-06-10.md: Sanitized memory snapshot

scripts/ci-pre-push.sh

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-#!/bin/bash
-# ci-pre-push.sh - Validate markdown files before push
-set -euo pipefail
-
-RED='\033[0;31m'
-GREEN='\033[0;32m'
-YELLOW='\033[1;33m'
-NC='\033[0m'
-
-echo -e "${YELLOW}Running pre-push checks...${NC}"
-
-# Check if any markdown files changed
-if [[ $(git diff --cached --name-only --diff-filter=ACM | grep -E '\.(md|markdown)$' | wc -l) -eq 0 ]]; then
-  echo "No markdown files staged for commit."
-  exit 0
-fi
-
-ERRORS=0
-
-# Validate each staged markdown file
-while IFS= read -r file; do
-  echo "Checking $file..."
-  if [[ -f "$file" ]]; then
-    # Check front-matter existence (--- at start)
-    if ! head -n 1 "$file" | grep -q '^---$'; then
-      echo -e "${RED}ERROR: $file is missing front-matter (should start with ---)${NC}"
-      ((ERRORS++))
-    else
-      # Extract front-matter block (lines between first and second ---)
-      front_matter=$(sed -n '2,/^---$/p' "$file" | head -n -1)
-      # Check for required fields
-      if ! echo "$front_matter" | grep -q '^title:'; then
-        echo -e "${RED}ERROR: $file missing title in front-matter${NC}"
-        ((ERRORS++))
-      fi
-      if ! echo "$front_matter" | grep -q '^date:'; then
-        echo -e "${RED}ERROR: $file missing date in front-matter${NC}"
-        ((ERRORS++))
-      fi
-      # Optional: check date format
-      date_line=$(echo "$front_matter" | grep '^date:' | sed 's/date: //')
-      if [[ -n "$date_line" && ! "$date_line" =~ ^[0-9]{4}-[0-9]{2}-[0-9]{2}$ ]]; then
-        echo -e "${YELLOW}WARNING: $file date format not YYYY-MM-DD: $date_line${NC}"
-      fi
-    fi
-
-    # Spell check if aspell is available
-    if command -v aspell >/dev/null 2>&1; then
-      # Strip front-matter and code blocks, then spell check
-      content=$(sed '/^---$/,/^---$/d' "$file" | sed '/```.*/,/```/d')
-      if echo "$content" | aspell list | grep -v '^$' | head -n 5 | grep -q .; then
-        echo -e "${YELLOW}WARNING: $file has potential spelling errors (see above)${NC}"
-        # Don't fail on spelling
-      fi
-    fi
-
-    # Check for TODO/FIXME comments (optional warning)
-    if grep -n -i 'TODO\|FIXME' "$file" | head -n 5 | grep -q .; then
-      echo -e "${YELLOW}INFO: $file contains TODO/FIXME comments${NC}"
-    fi
-  fi
-done < <(git diff --cached --name-only --diff-filter=ACM | grep -E '\.(md|markdown)$')
-
-if [[ $ERRORS -gt 0 ]]; then
-  echo -e "${RED}Pre-push checks failed. Fix errors above before committing.${NC}"
-  exit 1
-else
-  echo -e "${GREEN}All pre-push checks passed.${NC}"
-fi

scripts/env.sh

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-#!/bin/bash\nexport PATH=\$PATH:\$HOME/morpheus-brain/scripts

scripts/new-study.sh

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-#!/bin/bash
-# new-study.sh - Scaffold a new research markdown file
-# Usage: ./scripts/new-study.sh <topic-name> [YYYY-MM-DD]
-set -e
-TOPIC="${1:?topic name required}"
-DATE="${2:-$(date +%Y-%m-%d)}"
-FILE="research/tech-study/${DATE}-${TOPIC}.md"
-mkdir -p "$(dirname "$FILE")"
-
-cat > "$FILE" <<EOF
----
-title: "${TOPIC}"
-date: ${DATE}
-tags: ["#${TOPIC}", "#tech-study"]
-status: draft
-related: []
----
-
-# ${TOPIC//-/ }
-
-## Purpose
-Briefly describe the study's goal.
-
-## Insights
-- 
-
-## Sources
-- 
-
-## Action Items
-- [ ] 
-EOF
-
-echo "Created $FILE"
-# Append to knowledge-base/index.md
-echo "- ${DATE}-${TOPIC}.md: ${TOPIC//-/ }" >> knowledge-base/index.md
-echo "Appended entry to knowledge-base/index.md"