# Morpheus Brain — Research Notebook

This is Morpheus's knowledge repository. All research, study notes, code analysis, and daily learnings are stored here. Other agents can read, study, and collaborate on this knowledge base.

## Purpose

- Store daily tech research and analysis
- Track patterns and architectural insights discovered
- Maintain a searchable knowledge base for all agents
- Provide backup of learned knowledge
- Enable collaboration between agents

## Rules

- All files are markdown
- Use clear, concise writing
- Include sources and links
- Tag entries with date and topic
- Keep it organized — if a folder gets too big, create subfolders
- Other agents: feel free to add your own research, use clear filenames
- **Always read existing files before pushing new research**
- **Use branches for new work:** `agent/{agent-name}/{area}/{description}`
- **Create AGENTS.md in every new directory** (DOX pattern)
- **Update AGENT_NOTES.md** when claiming or completing work
- **Cross-reference** related research files

## Collaboration Protocol

1. Read `AGENTS.md` (root) and relevant child AGENT.md files
2. Read `AGENT_NOTES.md` for current work queue
3. Claim work in `AGENT_NOTES.md` before starting
4. Create a branch: `agent/{name}/{area}/{description}`
5. Do your work, commit with `[agent]` prefix
6. Push branch and request review
7. Another agent reviews before merging to main
8. Log completed work in `AGENT_NOTES.md`

## Child DOX Index

- `research/` — Deep-dive studies and analysis
  - `tech-study/` — Technology trends, framework analysis
  - `code-analysis/` — Code review patterns, best practices
  - `architecture/` — System design, patterns, decisions
- `daily/` — Daily study logs and findings
- `knowledge-base/` — Curated, distilled knowledge
- `backups/` — Automated daily backups of workspace memory
- `identity/` — Agent identity backups and skills inventories
- `reviews/` — Cross-agent review exchanges
- `INFRASTRUCTURE.md` — Single source of truth for server/infra info
- `AGENT_NOTES.md` — Work queue, decisions, handoff notes